Publications

Ana Maria Bocsanczy, Andres S Espindola, David J Norman (2019). Whole-Genome Sequences of Ralstonia solanacearum Strains P816, P822, and P824, Emerging Pathogens of Blueberry in Florida. Microbiol Resour Announc.

Francisco Ochoa-Corona, Kitty Cardwell, Andres S. Espindola (2019). New Technologies from the Microbial World: Alternatives for Biomedical Surrogate Research. Advances in Biotechnology and Microbiology.

Andres Espindola, Kitty F Cardwell (2019). Microbe Finder (MiFi): pathogen detection in metagenomic sequence data. Plant Health 2019.

A Espindola, J Habiger, KF Cardwell (2019). Metagenome sequence calculator for effective pathogen detection. PHYTOPATHOLOGY.

Maria Fernanda Proano, Andres Espindola, Z Gloria Abad, Carla D Garzon (2019). In silico detection of multiple oomycetes in metagenomic data by using E-probe Detection of Nucleic acid Analysis (EDNA). Plant Health 2019.

Andres Espindola, Avijit Roy, Vessela A Mavrodieva, Kitty F Cardwell (2019). E-probe: A new diagnostic tool for detection of Dichorhaviruses associated with Citrus leprosis syndrome. Plant Health 2019.

Trenna Blagden, Andres Espindola, Kitty Cardwell, Alejandro Ortega-Beltran, Ranajit Bandyopadhyay (2019). Draft genome sequences of three isolates of Coniothyrium glycines, causal agent of red leaf blotch of soybean. Microbiology resource announcements.

Andres Espindola, Viviana Freire-Zapata, Luı́s Fernando Maranho Watanabe, Francisco Ochoa Corona, Kitty F Cardwell (2019). Detecting viruses and bacteria of grapevine with Microbe Finder (MiFi) and an Oxford Nanopore sequencer. Plant Health 2019.

Andres S Espindola, Kitty F. Cardwell (2018). Third generation sequencing and EDNA for detection of aflatoxin production in the soil.. International Congress of Plant Pathology (ICPP) 2018: Plant Health in A Global Economy.

Andres S Espindola, William Schneider, Kitty F Cardwell, Yisel Carrillo, Peter R Hoyt, Stephen M Marek, Hassan A Melouk, Carla D Garzon (2018). Inferring the presence of aflatoxin-producing Aspergillus flavus strains using RNA sequencing and electronic probes as a transcriptomic screening tool. PloS one.

L Pena Zuniga, J Daniels, A Espindola, F Ochoa Corona (2018). EDNA-Water, using deep sequencing and bioinformatics approach for water-borne plant virus detection. PHYTOPATHOLOGY.

AM Bocsanczy, A Espindola, DJ Norman, KF Cardwell (2018). E-probes development for rapid, sensitive and specific pathogen detection in blueberries. PHYTOPATHOLOGY.

MF Proano, A Espindola, CD Garzon (2018). Detection of multiple oomycetes in metagenomic data by Using E-probe Detection of Nucleic Analysis (EDNA). PHYTOPATHOLOGY.

Jerry E Weiland, Patricia Garrido, Zhian N Kamvar, Andrés S Espı́ndola, Stephen M Marek, Niklaus J Grünwald, Carla D Garzón (2017). WeilandPopulationStructurePythiumSupFigure1. pdf.

Jerry E Weiland, Patricia Garrido, Zhian N Kamvar, Andrés S Espı́ndola, Stephen M Marek, Niklaus J Grünwald, Carla D Garzón (2017). WeilandPopulationStructurePythium. pdf.

Sara Wallace, Maria Fernanda Proano, Andres Espindola, Mohammed Arif, Margery L Daughtrey, Carla D Garzon (2017). Validation of species specific primers for detection and discrimination of Pythium aphanidermatum and P. deliense. 2017 APS Annual Meeting.

Andres Espindola, William Schneider, Hassan A Melouk, Stephen M Marek, Kitty F Cardwell, Carla D Garzon (2017). Unassembled transcriptome analysis to infer aflatoxin production in Aspergillus flavus strains infecting corn using EDNA. 2017 APS Annual Meeting.

Lizbeth Pena Zuniga, Andres Espindola, Patricia Klein, Thomas Debener, Jasper Rees, David Byrne, Kitty F Cardwell, Francisco Ochoa Corona (2017). EDNA-Rose a novel approach for detecting rose viruses combining next generation sequencing and bioinformatics. 2017 APS Annual Meeting.

Lizbeth Pena Zuniga, Andres Espindola, Hassan A Melouk, Akhtar Ali, Kitty F Cardwell, Francisco Ochoa Corona (2017). Detection of cucurbit viruses in Oklahoma combining EDNA with Multiplex RT-PCR coupled with High Resolution Melting. 2017 APS Annual Meeting.

Andres Sebastian Espindola (2016). Eukaryotic Plant Pathogen Detection Through High Throughput DNA/RNA Sequencing Data Analysis.

AS Espindola, WL Schneider, H Melouk, S Marek, CD Garzon (2015). The draft genome of Sclerotinia minor. PHYTOPATHOLOGY.

Jerry E Weiland, Patricia Garrido, Zhian N Kamvar, Andrés S Espı́ndola, Stephen M Marek, Niklaus J Grünwald, Carla D Garzón (2015). Population structure of Pythium irregulare, P. ultimum, and P. sylvaticum in forest nursery soils of Oregon and Washington. Phytopathology.

AS Espindola, WL Schneider, S Marek, P Hoyt, CD Garzon (2015). Metagenome data mining for eukaryotic plant pathogens. PHYTOPATHOLOGY.

Andres Espindola, William Schneider, Peter R Hoyt, Stephen M Marek, Carla Garzon (2015). A new approach for detecting fungal and oomycete plant pathogens in next generation sequencing metagenome data utilising electronic probes. International journal of data mining and bioinformatics.

M Arif, S Dobhal, PA Garrido, GK Orquera, AS Espı́ndola, CA Young, FM Ochoa-Corona, SM Marek, CD Garzón (2014). Highly sensitive end-point PCR and SYBR green qPCR detection of Phymatotrichopsis omnivora, causal fungus of cotton root rot. Plant disease.

A Stobbe, J Daniels, A Espindola, V Ruchi, U Melcher, F Ochoa-Corona, C Garzon, J Fletcher (2013). PUBLISHED WORK. THE USE OF NEXT GENERATION SEQUENCING TO DETECT PLANT PATHOGENIC PROKARYOTES.

Andres Sebastian Espindola (2013). Massively Parallel Sequencing (Mps) As a Diagnostic and Forensic Analysis Tool for Important Fungi and Chromista Plant Pathogens.

Anthony H Stobbe, Jon Daniels, Andres S Espindola, Ruchi Verma, Ulrich Melcher, Francisco Ochoa-Corona, Carla Garzon, Jacqueline Fletcher, William Schneider (2013). E-probe Diagnostic Nucleic acid Analysis (EDNA): a theoretical approach for handling of next generation sequencing data for diagnostics. Journal of microbiological methods.

J Daniels, A Stobbe, A Espindola, W Schneider, J Sallee, T Blagden, F Ochoa Corona, C Garzon, J Fletcher (2013). CSI in a tomato disease plot: Engaging 4-H youth and educators in STEM through investigative plant pathology. Phytopathology.

W Schneider, R Verma, A Stobbe, J Daniels, A Espindola, T Blagden, J Fletcher, FM Ochoa-Corona, C Garzon, U Melcher (2013). Bioinformatics strategies for microbial forensics. PHYTOPATHOLOGY.

AS Espindola, CD Garzon, J Fletcher, WL Schneider (2012). Validation of EDNA, a newly developed bioinformatics tool, for detection of Phakopsora pachyrhizi from metagenomic samples. PHYTOPATHOLOGY.

WL Schneider, AH Stobbe, J Daniels, AS Espindola, R Verma, T Blagden, J Fletcher, F Ochoa-Corona, C Garzon, PR Hoyt, others (2012). Next-generation diagnostics: Eliminating the excessive sequence processing associated with next-generation sequencing using EDNA. PHYTOPATHOLOGY.

AH Stobbe, J Daniels, A Espindola, WL Schneider, J Fletcher, UK Melcher (2011). Use of massively parallel sequencing as a diagnostic tool. PHYTOPATHOLOGY.

J Daniels, T Stobbe, A Espindola, W Schneider, J Fletcher, FM Ochoa-Corona (2011). In silico simulation of massively parallel sequencing as a diagnostic tool for bacterial phytopathogens. PHYTOPATHOLOGY.

AS Espindola, AH Stobbe, J Daniels, J Fletcher, CD Garzon, WL Schneider (2011). Design and validation of queries for the detection of Phytophthora ramorum in simulated metagenomes. PHYTOPATHOLOGY.

Andrés Sebastian Espindola Camacho (2009). Remoción de arsénico de un medio liquido a nivel de laboratorio mediante la utilización de un consorcio y una cepa axenica de cianobacterias en suspensión aisladas a partir de las hojas de polylepis pauta de bosques nativos del páramo de Papallacta, Ecuador.