Selected Publications

In Int. J. Data Mining and Bioinformatics.,2015

Recent Publications

. A new approach for detecting fungal and oomycete plant pathogens in next generation sequencing metagenome data utilising electronic probes. In Int. J. Data Mining and Bioinformatics., 2015.

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. E-probe Diagnostic Nucleic acid Analysis (EDNA): a theoretical approach for handling of next generation sequencing data for diagnostics. In Journal of microbiological methods., 2013.

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Recent Posts

While installing Anaconda updates through the Anaconda navigator I encountered an issue: Although a prompt showing a progress bar of the update was actively moving, it was taking too long (hours) to update the anaconda navigator. I decided to go through the Anaconda prompt and it took 30 seconds. Here are my findings.

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This is a basic post on how to interact with github through command line

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Analyzing metagenomic or metatranscriptomic sequencing datasets can cause a lot of trouble when excesive depth is utilized. This is true for microbiome studies that include the host background in the dataset. De-hosting by mapping the total dataset to the host genome could help with the assembly of this type of datasets.

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This is a post for github advances users that don’t want to type their username and password everytime a change is commited and pushed to your branch

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Projects

Teaching

I have been involved in teaching activities as a Lecturer, Teaching Assistant and Instructor of Bioinformatic workshops.

  • Teaching Assistant: Principles of Plant Pathology (Fall 2013 - Fall 2015)
  • Lecturer: Microbiology I and Microbiology II (2010)
  • Instructor: Bioinformatic workshops in OSU, ESPE, INSPI.

Contact